PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.008G029300.2
Common NameB456_008G029300, LOC105762863
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 422aa    MW: 46387.2 Da    PI: 5.3404
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.008G029300.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.75.5e-10227274455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Gorai.008G029300.2 227 SHSLAERVRREKISERMKYLQDLVPGC----NKITGKAGMLDEIINYVQSLQ 274
                         8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.33E-17221291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.55E-10221278No hitNo description
Gene3DG3DSA:4.10.280.104.0E-17223290IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.618223273IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-7227274IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-9229279IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009637Biological Processresponse to blue light
GO:0009911Biological Processpositive regulation of flower development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MNRALAETLT VLDRQRASVK WQQESYFSEL SGVFSTQTST HVHGFQGDLI SDESVLDDLV  60
MTRQVKPDPS LETSWPELGK VDMAGMGFGP CGYSNGPSFD MNYAISRTFS CPPAVAATIA  120
KEAMEVKGKE SIVSENMGSA VARESSKKRK ADKLHNSKVA ADDDSKKTKA CGEEAEESKI  180
TGPPNTNKSS TKQEPSADTS KENSKLTEVQ KPDYIHVRAR RGQATDSHSL AERVRREKIS  240
ERMKYLQDLV PGCNKITGKA GMLDEIINYV QSLQRQVEFL SMKLAAVNPR LDFDIDNLFA  300
KDVFPPCMTN FPTVGMSSEM ANPSYLHFNP VQQVVACSGV EMGLNSPDIA LWRTISAPES  360
TIPDASFLDT SCFTQIQPSP TWDVELQNVY NVAFEHGRST TPFPSQPFAG SIEASHLKME  420
M*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012436257.10.0PREDICTED: transcription factor HBI1-like isoform X4
SwissprotQ8GY611e-66BH063_ARATH; Transcription factor bHLH63
TrEMBLA0A0D2STS70.0A0A0D2STS7_G
STRINGPOPTR_0009s12000.11e-159(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34530.18e-68cryptochrome-interacting basic-helix-loop-helix 1
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]